IL_6OF1_242
3D structure
- PDB id
- 6OF1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGGAGG*CCGAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OF1_242 not in the Motif Atlas
- Geometric match to IL_5TBW_026
- Geometric discrepancy: 0.3418
- The information below is about IL_5TBW_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82488.1
- Basepair signature
- cWW-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6OF1|1|2A|G|1856
6OF1|1|2A|G|1857
6OF1|1|2A|G|1858
6OF1|1|2A|A|1859
6OF1|1|2A|G|1860
6OF1|1|2A|G|1861
*
6OF1|1|2A|C|1881
6OF1|1|2A|C|1882
6OF1|1|2A|G|1883
6OF1|1|2A|A|1884
6OF1|1|2A|A|1885
6OF1|1|2A|C|1886
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 21
- 50S ribosomal protein L28
- Chain 2y
- Transfer RNA; tRNA
Coloring options: