3D structure

PDB id
6OF1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
GGGAGG*CCGAAC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OF1_242 not in the Motif Atlas
Geometric match to IL_5TBW_026
Geometric discrepancy: 0.3418
The information below is about IL_5TBW_026
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_82488.1
Basepair signature
cWW-tSH-tSH-tHS-cWW-cWW
Number of instances in this motif group
7

Unit IDs

6OF1|1|2A|G|1856
6OF1|1|2A|G|1857
6OF1|1|2A|G|1858
6OF1|1|2A|A|1859
6OF1|1|2A|G|1860
6OF1|1|2A|G|1861
*
6OF1|1|2A|C|1881
6OF1|1|2A|C|1882
6OF1|1|2A|G|1883
6OF1|1|2A|A|1884
6OF1|1|2A|A|1885
6OF1|1|2A|C|1886

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 21
50S ribosomal protein L28
Chain 2y
Transfer RNA; tRNA

Coloring options:


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