IL_6OF1_252

3D structure

PDB id

6OF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OF1_252 not in the Motif Atlas

Geometric match to IL_1KXK_003

Geometric discrepancy: 0.2851

The information below is about IL_1KXK_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

6OF1|1|2A|G|2110
6OF1|1|2A|C|2111
6OF1|1|2A|G|2112
6OF1|1|2A|U|2113
6OF1|1|2A|A|2114
6OF1|1|2A|G|2115
6OF1|1|2A|G|2116
6OF1|1|2A|A|2117
6OF1|1|2A|U|2118
6OF1|1|2A|A|2119
6OF1|1|2A|G|2120
*
6OF1|1|2A|C|2178
6OF1|1|2A|C|2179

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2y

Transfer RNA; tRNA