IL_6OF1_357
3D structure
- PDB id
- 6OF1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CCAG*CUG
- Length
- 7 nucleotides
- Bulged bases
- 6OF1|1|2A|C|995
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OF1_357 not in the Motif Atlas
- Geometric match to IL_7Y2B_003
- Geometric discrepancy: 0.2632
- The information below is about IL_7Y2B_003
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 259
Unit IDs
6OF1|1|2A|C|994
6OF1|1|2A|C|995
6OF1|1|2A|A|996
6OF1|1|2A|G|997
*
6OF1|1|2A|C|1158
6OF1|1|2A|U|1159
6OF1|1|2A|G|1160
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 23
- 50S ribosomal protein L30
- Chain 2N
- 50S ribosomal protein L13
- Chain 2U
- 50S ribosomal protein L20
- Chain 2V
- 50S ribosomal protein L21
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