IL_6OF1_360

3D structure

PDB id

6OF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGGAGCC*GGCGCCGGUGAAAUACC

Length

24 nucleotides

Bulged bases

6OF1|1|2A|C|2164, 6OF1|1|2A|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OF1|1|2A|G|2123
6OF1|1|2A|G|2124
6OF1|1|2A|G|2125
6OF1|1|2A|A|2126
6OF1|1|2A|G|2127
6OF1|1|2A|C|2128
6OF1|1|2A|C|2129
*
6OF1|1|2A|G|2159
6OF1|1|2A|G|2160
6OF1|1|2A|C|2161
6OF1|1|2A|G|2162
6OF1|1|2A|C|2163
6OF1|1|2A|C|2164
6OF1|1|2A|G|2165
6OF1|1|2A|G|2166
6OF1|1|2A|U|2167
6OF1|1|2A|G|2168
6OF1|1|2A|A|2169
6OF1|1|2A|A|2170
6OF1|1|2A|A|2171
6OF1|1|2A|U|2172
6OF1|1|2A|A|2173
6OF1|1|2A|C|2174
6OF1|1|2A|C|2175

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2y

Transfer RNA; tRNA