IL_6OF6_052

3D structure

PDB id

6OF6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OF6_052 not in the Motif Atlas

Geometric match to IL_4ZC7_004

Geometric discrepancy: 0.1433

The information below is about IL_4ZC7_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6OF6|1|QA|G|1405
6OF6|1|QA|U|1406
6OF6|1|QA|C|1407
*
6OF6|1|QA|G|1494
6OF6|1|QA|U|1495
6OF6|1|QA|C|1496

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QX

mRNA

Chain QY

Transfer RNA; tRNA

Chain RA

Large subunit ribosomal RNA; LSU rRNA