3D structure

PDB id
6OF6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CUGUAG*CGAAGG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OF6_086 not in the Motif Atlas
Homologous match to IL_7A0S_027
Geometric discrepancy: 0.1779
The information below is about IL_7A0S_027
Detailed Annotation
5x5 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_81631.1
Basepair signature
cWW-L-R-cSH-R-R-L-R-cWW
Number of instances in this motif group
2

Unit IDs

6OF6|1|RA|C|857
6OF6|1|RA|U|858
6OF6|1|RA|G|859
6OF6|1|RA|U|860
6OF6|1|RA|A|861
6OF6|1|RA|G|862
*
6OF6|1|RA|C|915
6OF6|1|RA|G|916
6OF6|1|RA|A|917
6OF6|1|RA|A|918
6OF6|1|RA|G|919
6OF6|1|RA|G|920

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R0
50S ribosomal protein L27
Chain R3
50S ribosomal protein L30
Chain RB
5S ribosomal RNA; 5S rRNA
Chain RQ
50S ribosomal protein L16
Chain RZ
50S ribosomal protein L25

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