3D structure

PDB id
6OF6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGUAAC*GGAGAAG
Length
13 nucleotides
Bulged bases
6OF6|1|RA|G|1699
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OF6_123 not in the Motif Atlas
Homologous match to IL_7RQB_068
Geometric discrepancy: 0.1265
The information below is about IL_7RQB_068
Detailed Annotation
tSH-tSH-tHH-tHS
Broad Annotation
No text annotation
Motif group
IL_65969.2
Basepair signature
cWW-tSH-tSH-tHH-tHS-cWW
Number of instances in this motif group
8

Unit IDs

6OF6|1|RA|C|1686
6OF6|1|RA|G|1687
6OF6|1|RA|U|1688
6OF6|1|RA|A|1689
6OF6|1|RA|A|1690
6OF6|1|RA|C|1691
*
6OF6|1|RA|G|1696
6OF6|1|RA|G|1697
6OF6|1|RA|A|1698
6OF6|1|RA|G|1699
6OF6|1|RA|A|1700
6OF6|1|RA|A|1701
6OF6|1|RA|G|1702

Current chains

Chain RA
23S rRNA

Nearby chains

Chain QA
Small subunit ribosomal RNA; SSU rRNA
Chain RD
50S ribosomal protein L2

Coloring options:


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