IL_6OF6_130

3D structure

PDB id

6OF6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGGAGG*CCGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OF6_130 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.3281

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6OF6|1|RA|G|1856
6OF6|1|RA|G|1857
6OF6|1|RA|G|1858
6OF6|1|RA|A|1859
6OF6|1|RA|G|1860
6OF6|1|RA|G|1861
*
6OF6|1|RA|C|1881
6OF6|1|RA|C|1882
6OF6|1|RA|G|1883
6OF6|1|RA|A|1884
6OF6|1|RA|A|1885
6OF6|1|RA|C|1886

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QW

Transfer RNA; tRNA

Chain R1

50S ribosomal protein L28