3D structure

PDB id
6OF6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CUAGUAC*GGACCG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OF6_157 not in the Motif Atlas
Homologous match to IL_4WF9_100
Geometric discrepancy: 0.1929
The information below is about IL_4WF9_100
Detailed Annotation
Sarcin-Ricin target in LSU H95; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_16458.4
Basepair signature
cWW-L-R-L-R-cSH-tWH-tHS-cWW
Number of instances in this motif group
5

Unit IDs

6OF6|1|RA|C|2652
6OF6|1|RA|U|2653
6OF6|1|RA|A|2654
6OF6|1|RA|G|2655
6OF6|1|RA|U|2656
6OF6|1|RA|A|2657
6OF6|1|RA|C|2658
*
6OF6|1|RA|G|2663
6OF6|1|RA|G|2664
6OF6|1|RA|A|2665
6OF6|1|RA|C|2666
6OF6|1|RA|C|2667
6OF6|1|RA|G|2668

Current chains

Chain RA
23S rRNA

Nearby chains

Chain RH
50S ribosomal protein L6

Coloring options:


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