IL_6OF6_161

3D structure

PDB id

6OF6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

6OF6|1|RA|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OF6_161 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.0916

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6OF6|1|RA|G|2737
6OF6|1|RA|A|2738
6OF6|1|RA|U|2739
6OF6|1|RA|A|2740
6OF6|1|RA|A|2741
6OF6|1|RA|C|2742
*
6OF6|1|RA|G|2762
6OF6|1|RA|G|2763
6OF6|1|RA|A|2764
6OF6|1|RA|A|2765
6OF6|1|RA|G|2766
6OF6|1|RA|C|2767

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6

Chain RN

50S ribosomal protein L13