IL_6OF6_229

3D structure

PDB id

6OF6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

6OF6|1|XA|G|1443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OF6_229 not in the Motif Atlas

Homologous match to IL_6CZR_172

Geometric discrepancy: 0.4098

The information below is about IL_6CZR_172

Detailed Annotation

Isolated basepair with bulged bases

Broad Annotation

Isolated basepair with bulged bases

Motif group

IL_97255.3

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6OF6|1|XA|C|1440
6OF6|1|XA|G|1441
6OF6|1|XA|G|1442
6OF6|1|XA|G|1443
6OF6|1|XA|A|1446
6OF6|1|XA|G|1447
*
6OF6|1|XA|C|1459
6OF6|1|XA|A|1460
6OF6|1|XA|G|1461

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20

Chain YA

Large subunit ribosomal RNA; LSU rRNA

Chain YT

50S ribosomal protein L19