IL_6OF6_262
3D structure
- PDB id
- 6OF6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GCUAG*CAAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OF6_262 not in the Motif Atlas
- Homologous match to IL_5J7L_274
- Geometric discrepancy: 0.3622
- The information below is about IL_5J7L_274
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
6OF6|1|YA|G|875
6OF6|1|YA|C|876
6OF6|1|YA|U|877
6OF6|1|YA|A|878
6OF6|1|YA|G|879
*
6OF6|1|YA|C|898
6OF6|1|YA|A|899
6OF6|1|YA|A|900
6OF6|1|YA|A|901
6OF6|1|YA|C|902
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain XY
- Transfer RNA; tRNA
- Chain YQ
- 50S ribosomal protein L16
- Chain YZ
- 50S ribosomal protein L25
Coloring options: