IL_6OF6_263

3D structure

PDB id

6OF6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGG*CUAC

Length

7 nucleotides

Bulged bases

6OF6|1|YA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OF6_263 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.3361

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_42997.4

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

21

Unit IDs

6OF6|1|YA|G|880
6OF6|1|YA|G|881
6OF6|1|YA|G|882
*
6OF6|1|YA|C|894
6OF6|1|YA|U|895
6OF6|1|YA|A|896
6OF6|1|YA|C|897

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XY

Transfer RNA; tRNA

Chain YZ

50S ribosomal protein L25