3D structure

PDB id
6OF6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GUC*GC
Length
5 nucleotides
Bulged bases
6OF6|1|YA|U|1012
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OF6_268 not in the Motif Atlas
Homologous match to IL_7RQB_038
Geometric discrepancy: 0.1424
The information below is about IL_7RQB_038
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_83039.16
Basepair signature
cWW-L-cWW
Number of instances in this motif group
116

Unit IDs

6OF6|1|YA|G|1011
6OF6|1|YA|U|1012
6OF6|1|YA|C|1013
*
6OF6|1|YA|G|1149
6OF6|1|YA|C|1150

Current chains

Chain YA
23S rRNA

Nearby chains

Chain YN
50S ribosomal protein L13
Chain YU
50S ribosomal protein L20

Coloring options:


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