3D structure

PDB id
6OF6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CUGUGAAC*GGGAG
Length
13 nucleotides
Bulged bases
6OF6|1|YA|U|2132
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OF6_317 not in the Motif Atlas
Homologous match to IL_5J7L_330
Geometric discrepancy: 0.3763
The information below is about IL_5J7L_330
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.9
Basepair signature
cWW-tSS-tSH-L-tHS-tHS-cWW
Number of instances in this motif group
27

Unit IDs

6OF6|1|YA|C|2129
6OF6|1|YA|U|2130
6OF6|1|YA|G|2131
6OF6|1|YA|U|2132
6OF6|1|YA|G|2133
6OF6|1|YA|A|2134
6OF6|1|YA|A|2135
6OF6|1|YA|C|2136
*
6OF6|1|YA|G|2155
6OF6|1|YA|G|2156
6OF6|1|YA|G|2157
6OF6|1|YA|A|2158
6OF6|1|YA|G|2159

Current chains

Chain YA
23S rRNA

Nearby chains

Chain QA
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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