IL_6OF6_317

3D structure

PDB id

6OF6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

6OF6|1|YA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OF6_317 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.3763

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6OF6|1|YA|C|2129
6OF6|1|YA|U|2130
6OF6|1|YA|G|2131
6OF6|1|YA|U|2132
6OF6|1|YA|G|2133
6OF6|1|YA|A|2134
6OF6|1|YA|A|2135
6OF6|1|YA|C|2136
*
6OF6|1|YA|G|2155
6OF6|1|YA|G|2156
6OF6|1|YA|G|2157
6OF6|1|YA|A|2158
6OF6|1|YA|G|2159

Current chains

Chain YA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA