IL_6OF6_319

3D structure

PDB id

6OF6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OF6_319 not in the Motif Atlas

Homologous match to IL_7RQB_089

Geometric discrepancy: 0.0678

The information below is about IL_7RQB_089

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.10

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

33

Unit IDs

6OF6|1|YA|C|2350
6OF6|1|YA|G|2351
6OF6|1|YA|A|2352
6OF6|1|YA|G|2353
*
6OF6|1|YA|C|2364
6OF6|1|YA|G|2365
6OF6|1|YA|A|2366
6OF6|1|YA|G|2367

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y0

50S ribosomal protein L27

Chain Y6

50S ribosomal protein L33

Chain Y8

50S ribosomal protein L35