IL_6OF6_324

3D structure

PDB id

6OF6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OF6_324 not in the Motif Atlas

Geometric match to IL_7A0S_086

Geometric discrepancy: 0.1354

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

6OF6|1|YA|A|2459
6OF6|1|YA|U|2460
6OF6|1|YA|C|2461
*
6OF6|1|YA|G|2489
6OF6|1|YA|G|2490
6OF6|1|YA|U|2491
6OF6|1|YA|U|2492
6OF6|1|YA|U|2493

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XY

Transfer RNA; tRNA

Chain Y0

50S ribosomal protein L27

Chain YQ

50S ribosomal protein L16