IL_6OF6_368

3D structure

PDB id

6OF6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AUA*UGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OF6_368 not in the Motif Atlas

Homologous match to IL_7A0S_030

Geometric discrepancy: 0.1393

The information below is about IL_7A0S_030

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

6OF6|1|YA|A|870
6OF6|1|YA|U|871
6OF6|1|YA|A|872
*
6OF6|1|YA|U|905
6OF6|1|YA|G|906
6OF6|1|YA|U|907

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XY

Transfer RNA; tRNA

Chain YQ

50S ribosomal protein L16

Chain YZ

50S ribosomal protein L25