IL_6OFX_041

3D structure

PDB id

6OFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated ribosome (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

6OFX|1|1|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OFX_041 not in the Motif Atlas

Homologous match to IL_9DFE_043

Geometric discrepancy: 0.4014

The information below is about IL_9DFE_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OFX|1|1|G|1087
6OFX|1|1|A|1088
6OFX|1|1|A|1089
6OFX|1|1|A|1090
6OFX|1|1|G|1091
*
6OFX|1|1|C|1100
6OFX|1|1|U|1101
6OFX|1|1|C|1102

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain f

50S ribosomal protein L6