3D structure

PDB id
6OFX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Non-rotated ribosome (Structure I)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
UG*UAAA
Length
6 nucleotides
Bulged bases
6OFX|1|1|A|1899, 6OFX|1|1|A|1900
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OFX_070 not in the Motif Atlas
Homologous match to IL_4WF9_071
Geometric discrepancy: 0.1861
The information below is about IL_4WF9_071
Detailed Annotation
Major groove intercalation
Broad Annotation
Major groove intercalation
Motif group
IL_82107.5
Basepair signature
cWW-cWW
Number of instances in this motif group
31

Unit IDs

6OFX|1|1|U|1841
6OFX|1|1|G|1842
*
6OFX|1|1|U|1898
6OFX|1|1|A|1899
6OFX|1|1|A|1900
6OFX|1|1|A|1901

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 3
Small subunit ribosomal RNA; SSU rRNA
Chain b
50S ribosomal protein L2

Coloring options:


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