IL_6OFX_121

3D structure

PDB id

6OFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated ribosome (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGCC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OFX_121 not in the Motif Atlas

Homologous match to IL_5J7L_010

Geometric discrepancy: 0.184

The information below is about IL_5J7L_010

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

6OFX|1|3|C|132
6OFX|1|3|U|133
6OFX|1|3|G|134
6OFX|1|3|C|135
6OFX|1|3|C|136
*
6OFX|1|3|G|227
6OFX|1|3|A|228
6OFX|1|3|U|229
6OFX|1|3|G|230

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain U

30S ribosomal protein S16

Chain Y

30S ribosomal protein S20