IL_6OFX_172

3D structure

PDB id

6OFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated ribosome (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

6OFX|1|3|A|1492, 6OFX|1|3|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OFX_172 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.2173

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6OFX|1|3|C|1407
6OFX|1|3|A|1408
6OFX|1|3|C|1409
*
6OFX|1|3|G|1491
6OFX|1|3|A|1492
6OFX|1|3|A|1493
6OFX|1|3|G|1494

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 4

mRNA

Chain Q

30S ribosomal protein S12