IL_6OG7_054

3D structure

PDB id

6OG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Non-rotated ribosome with RF2 bound (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUAAG*UGAUGA

Length

11 nucleotides

Bulged bases

6OG7|1|1|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OG7_054 not in the Motif Atlas

Geometric match to IL_4V9F_056

Geometric discrepancy: 0.3206

The information below is about IL_4V9F_056

Detailed Annotation

tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_62654.1

Basepair signature

cWW-tSH-tHH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6OG7|1|1|U|1467
6OG7|1|1|U|1468
6OG7|1|1|A|1469
6OG7|1|1|A|1470
6OG7|1|1|G|1471
*
6OG7|1|1|U|1520
6OG7|1|1|G|1521
6OG7|1|1|A|1522
6OG7|1|1|U|1523
6OG7|1|1|G|1524
6OG7|1|1|A|1525

Current chains

Chain 1

23S ribosomal RNA

Nearby chains