3D structure

PDB id
6OG7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Non-rotated ribosome with RF2 bound (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
AUA*UGUUU
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OG7_088 not in the Motif Atlas
Homologous match to IL_7RQB_094
Geometric discrepancy: 0.2116
The information below is about IL_7RQB_094
Detailed Annotation
Major groove minor groove platform with extra cWW
Broad Annotation
Major groove minor groove platform; mini C-loop
Motif group
IL_92788.2
Basepair signature
cWW-L-R-L-cWW-L
Number of instances in this motif group
14

Unit IDs

6OG7|1|1|A|2459
6OG7|1|1|U|2460
6OG7|1|1|A|2461
*
6OG7|1|1|U|2489
6OG7|1|1|G|2490
6OG7|1|1|U|2491
6OG7|1|1|U|2492
6OG7|1|1|U|2493

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 8
Peptide chain release factor RF2
Chain m
50S ribosomal protein L16

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0822 s