IL_6OG7_088
3D structure
- PDB id
- 6OG7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex with RF2 bound to the UGA codon. Non-rotated ribosome with RF2 bound (Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AUA*UGUUU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OG7_088 not in the Motif Atlas
- Homologous match to IL_7RQB_094
- Geometric discrepancy: 0.2116
- The information below is about IL_7RQB_094
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform; mini C-loop
- Motif group
- IL_92788.2
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 14
Unit IDs
6OG7|1|1|A|2459
6OG7|1|1|U|2460
6OG7|1|1|A|2461
*
6OG7|1|1|U|2489
6OG7|1|1|G|2490
6OG7|1|1|U|2491
6OG7|1|1|U|2492
6OG7|1|1|U|2493
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 8
- Peptide chain release factor RF2
- Chain m
- 50S ribosomal protein L16
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