IL_6OG7_177

3D structure

PDB id

6OG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Non-rotated ribosome with RF2 bound (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

6OG7|1|1|U|846, 6OG7|1|1|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OG7_177 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.3154

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

6OG7|1|1|A|844
6OG7|1|1|A|845
6OG7|1|1|U|846
6OG7|1|1|U|847
6OG7|1|1|C|848
*
6OG7|1|1|G|930
6OG7|1|1|U|931
6OG7|1|1|U|932
6OG7|1|1|A|933
6OG7|1|1|U|934

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain z

50S ribosomal protein L30