3D structure

PDB id
6OG7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Non-rotated ribosome with RF2 bound (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
AGAAU*GGAAU
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OG7_190 not in the Motif Atlas
Homologous match to IL_4LFB_065
Geometric discrepancy: 0.1434
The information below is about IL_4LFB_065
Detailed Annotation
Triple non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_49751.4
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

6OG7|1|3|A|673
6OG7|1|3|G|674
6OG7|1|3|A|675
6OG7|1|3|A|676
6OG7|1|3|U|677
*
6OG7|1|3|G|713
6OG7|1|3|G|714
6OG7|1|3|A|715
6OG7|1|3|A|716
6OG7|1|3|U|717

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain K
30S ribosomal protein S6
Chain P
30S ribosomal protein S11
Chain W
30S ribosomal protein S18
Chain Z
30S ribosomal protein S21
Chain b
50S ribosomal protein L2

Coloring options:


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