3D structure

PDB id
6OGF (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UUAAGUG*CUAAA
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OGF_035 not in the Motif Atlas
Homologous match to IL_4WF9_039
Geometric discrepancy: 0.1574
The information below is about IL_4WF9_039
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_57188.5
Basepair signature
cWW-tWW-L-tWW-cWW-cSH
Number of instances in this motif group
5

Unit IDs

6OGF|1|1|U|1018
6OGF|1|1|U|1019
6OGF|1|1|A|1020
6OGF|1|1|A|1021
6OGF|1|1|G|1022
6OGF|1|1|U|1023
6OGF|1|1|G|1024
*
6OGF|1|1|C|1140
6OGF|1|1|U|1141
6OGF|1|1|A|1142
6OGF|1|1|A|1143
6OGF|1|1|A|1144

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain F
50S ribosomal protein L36
Chain j
50S ribosomal protein L13

Coloring options:


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