IL_6OGF_035

3D structure

PDB id

6OGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OGF_035 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1574

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6OGF|1|1|U|1018
6OGF|1|1|U|1019
6OGF|1|1|A|1020
6OGF|1|1|A|1021
6OGF|1|1|G|1022
6OGF|1|1|U|1023
6OGF|1|1|G|1024
*
6OGF|1|1|C|1140
6OGF|1|1|U|1141
6OGF|1|1|A|1142
6OGF|1|1|A|1143
6OGF|1|1|A|1144

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain j

50S ribosomal protein L13