IL_6OGF_051

3D structure

PDB id

6OGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

6OGF|1|1|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OGF_051 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.3663

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6OGF|1|1|C|1417
6OGF|1|1|G|1418
6OGF|1|1|A|1419
6OGF|1|1|A|1420
6OGF|1|1|G|1421
*
6OGF|1|1|C|1577
6OGF|1|1|U|1578
6OGF|1|1|A|1579
6OGF|1|1|A|1580
6OGF|1|1|G|1581

Current chains

Chain 1

23S ribosomal RNA

Nearby chains