IL_6OGF_129
3D structure
- PDB id
- 6OGF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGAAGAAG*UGUAAAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OGF_129 not in the Motif Atlas
- Homologous match to IL_4LFB_017
- Geometric discrepancy: 0.263
- The information below is about IL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28026.3
- Basepair signature
- cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
- Number of instances in this motif group
- 2
Unit IDs
6OGF|1|3|U|409
6OGF|1|3|G|410
6OGF|1|3|A|411
6OGF|1|3|A|412
6OGF|1|3|G|413
6OGF|1|3|A|414
6OGF|1|3|A|415
6OGF|1|3|G|416
*
6OGF|1|3|U|427
6OGF|1|3|G|428
6OGF|1|3|U|429
6OGF|1|3|A|430
6OGF|1|3|A|431
6OGF|1|3|A|432
6OGF|1|3|G|433
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain I
- 30S ribosomal protein S4
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