IL_6OGF_197

3D structure

PDB id

6OGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUGAUGUGUAGGAUAG*CCUUUAA

Length

23 nucleotides

Bulged bases

6OGF|1|1|U|2106, 6OGF|1|1|U|2111, 6OGF|1|1|G|2115, 6OGF|1|1|G|2116, 6OGF|1|1|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OGF|1|1|U|2105
6OGF|1|1|U|2106
6OGF|1|1|G|2107
6OGF|1|1|A|2108
6OGF|1|1|U|2109
6OGF|1|1|G|2110
6OGF|1|1|U|2111
6OGF|1|1|G|2112
6OGF|1|1|U|2113
6OGF|1|1|A|2114
6OGF|1|1|G|2115
6OGF|1|1|G|2116
6OGF|1|1|A|2117
6OGF|1|1|U|2118
6OGF|1|1|A|2119
6OGF|1|1|G|2120
*
6OGF|1|1|C|2178
6OGF|1|1|C|2179
6OGF|1|1|U|2180
6OGF|1|1|U|2181
6OGF|1|1|U|2182
6OGF|1|1|A|2183
6OGF|1|1|A|2184

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L1