IL_6OGF_198
3D structure
- PDB id
- 6OGF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGCA*UG
- Length
- 6 nucleotides
- Bulged bases
- 6OGF|1|3|G|1053, 6OGF|1|3|C|1054
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OGF_198 not in the Motif Atlas
- Geometric match to IL_1FUF_002
- Geometric discrepancy: 0.2966
- The information below is about IL_1FUF_002
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_82107.4
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
6OGF|1|3|U|1052
6OGF|1|3|G|1053
6OGF|1|3|C|1054
6OGF|1|3|A|1055
*
6OGF|1|3|U|1205
6OGF|1|3|G|1206
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain 4
- mRNA
- Chain 8
- Peptide chain release factor 2
- Chain H
- 30S ribosomal protein S3
- Chain O
- 30S ribosomal protein S10
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