IL_6OJ2_055

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OJ2_055 not in the Motif Atlas

Homologous match to IL_4LFB_062

Geometric discrepancy: 0.0865

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

6OJ2|1|QA|C|1431
6OJ2|1|QA|G|1432
6OJ2|1|QA|A|1433
6OJ2|1|QA|A|1434
6OJ2|1|QA|G|1435
*
6OJ2|1|QA|C|1466
6OJ2|1|QA|G|1467
6OJ2|1|QA|A|1468
6OJ2|1|QA|G|1469

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QT

30S ribosomal protein S20

Chain RA

Large subunit ribosomal RNA; LSU rRNA

Chain RT

50S ribosomal protein L19