3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GG*UAC
Length
5 nucleotides
Bulged bases
6OJ2|1|RA|A|896
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OJ2_089 not in the Motif Atlas
Geometric match to IL_1JZV_002
Geometric discrepancy: 0.3178
The information below is about IL_1JZV_002
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.6
Basepair signature
cWW-L-cWW
Number of instances in this motif group
130

Unit IDs

6OJ2|1|RA|G|880
6OJ2|1|RA|G|881
*
6OJ2|1|RA|U|895
6OJ2|1|RA|A|896
6OJ2|1|RA|C|897

Current chains

Chain RA
23S rRNA

Nearby chains

Chain QY
Transfer RNA; tRNA
Chain RQ
50S ribosomal protein L16
Chain RZ
50S ribosomal protein L25

Coloring options:


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