IL_6OJ2_089

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

6OJ2|1|RA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OJ2_089 not in the Motif Atlas

Geometric match to IL_1JZV_002

Geometric discrepancy: 0.3178

The information below is about IL_1JZV_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

6OJ2|1|RA|G|880
6OJ2|1|RA|G|881
*
6OJ2|1|RA|U|895
6OJ2|1|RA|A|896
6OJ2|1|RA|C|897

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QY

Transfer RNA; tRNA

Chain RQ

50S ribosomal protein L16

Chain RZ

50S ribosomal protein L25