IL_6OJ2_115

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OJ2_115 not in the Motif Atlas

Homologous match to IL_7RQB_060

Geometric discrepancy: 0.119

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6OJ2|1|RA|A|1469
6OJ2|1|RA|G|1470
6OJ2|1|RA|A|1471
6OJ2|1|RA|A|1472
6OJ2|1|RA|G|1473
*
6OJ2|1|RA|U|1520
6OJ2|1|RA|G|1521
6OJ2|1|RA|G|1522
6OJ2|1|RA|U|1523

Current chains

Chain RA

23S rRNA

Nearby chains