3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
AGAAG*UGGU
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OJ2_115 not in the Motif Atlas
Homologous match to IL_7RQB_060
Geometric discrepancy: 0.119
The information below is about IL_7RQB_060
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_07235.1
Basepair signature
cWW-tSH-L-tHS-cWW
Number of instances in this motif group
8

Unit IDs

6OJ2|1|RA|A|1469
6OJ2|1|RA|G|1470
6OJ2|1|RA|A|1471
6OJ2|1|RA|A|1472
6OJ2|1|RA|G|1473
*
6OJ2|1|RA|U|1520
6OJ2|1|RA|G|1521
6OJ2|1|RA|G|1522
6OJ2|1|RA|U|1523

Current chains

Chain RA
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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