IL_6OJ2_125

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

6OJ2|1|RA|G|1801, 6OJ2|1|RA|G|1816, 6OJ2|1|RA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OJ2_125 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.1016

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6OJ2|1|RA|U|1798
6OJ2|1|RA|G|1799
6OJ2|1|RA|C|1800
6OJ2|1|RA|G|1801
6OJ2|1|RA|A|1802
6OJ2|1|RA|A|1803
6OJ2|1|RA|C|1804
*
6OJ2|1|RA|G|1813
6OJ2|1|RA|G|1814
6OJ2|1|RA|A|1815
6OJ2|1|RA|G|1816
6OJ2|1|RA|G|1817
6OJ2|1|RA|U|1818
6OJ2|1|RA|A|1819
6OJ2|1|RA|U|1820
6OJ2|1|RA|A|1821

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2