IL_6OJ2_140

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCGUAGGAUAGG*CCC

Length

15 nucleotides

Bulged bases

6OJ2|1|RA|C|2111, 6OJ2|1|RA|G|2112, 6OJ2|1|RA|G|2115, 6OJ2|1|RA|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OJ2_140 not in the Motif Atlas

Geometric match to IL_7Y2B_002

Geometric discrepancy: 0.1914

The information below is about IL_7Y2B_002

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_42997.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

6OJ2|1|RA|G|2110
6OJ2|1|RA|C|2111
6OJ2|1|RA|G|2112
6OJ2|1|RA|U|2113
6OJ2|1|RA|A|2114
6OJ2|1|RA|G|2115
6OJ2|1|RA|G|2116
6OJ2|1|RA|A|2117
6OJ2|1|RA|U|2118
6OJ2|1|RA|A|2119
6OJ2|1|RA|G|2120
6OJ2|1|RA|G|2121
*
6OJ2|1|RA|C|2177
6OJ2|1|RA|C|2178
6OJ2|1|RA|C|2179

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QW

Transfer RNA; tRNA