IL_6OJ2_150

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OJ2_150 not in the Motif Atlas

Homologous match to IL_4WF9_093

Geometric discrepancy: 0.2218

The information below is about IL_4WF9_093

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6OJ2|1|RA|C|2466
6OJ2|1|RA|C|2467
6OJ2|1|RA|G|2468
6OJ2|1|RA|A|2469
6OJ2|1|RA|G|2470
*
6OJ2|1|RA|C|2480
6OJ2|1|RA|G|2481
6OJ2|1|RA|G|2482
6OJ2|1|RA|C|2483
6OJ2|1|RA|G|2484

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QY

Transfer RNA; tRNA

Chain R9

50S ribosomal protein L36

Chain RQ

50S ribosomal protein L16