3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CCGAG*CGGCG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OJ2_150 not in the Motif Atlas
Homologous match to IL_4WF9_093
Geometric discrepancy: 0.2218
The information below is about IL_4WF9_093
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

6OJ2|1|RA|C|2466
6OJ2|1|RA|C|2467
6OJ2|1|RA|G|2468
6OJ2|1|RA|A|2469
6OJ2|1|RA|G|2470
*
6OJ2|1|RA|C|2480
6OJ2|1|RA|G|2481
6OJ2|1|RA|G|2482
6OJ2|1|RA|C|2483
6OJ2|1|RA|G|2484

Current chains

Chain RA
23S rRNA

Nearby chains

Chain QY
Transfer RNA; tRNA
Chain R9
50S ribosomal protein L36
Chain RQ
50S ribosomal protein L16

Coloring options:


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