IL_6OJ2_200

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

6OJ2|1|XA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OJ2_200 not in the Motif Atlas

Homologous match to IL_6CZR_143

Geometric discrepancy: 0.103

The information below is about IL_6CZR_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37722.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

2

Unit IDs

6OJ2|1|XA|G|683
6OJ2|1|XA|A|684
6OJ2|1|XA|G|685
6OJ2|1|XA|U|686
6OJ2|1|XA|A|687
6OJ2|1|XA|G|688
*
6OJ2|1|XA|C|699
6OJ2|1|XA|G|700
6OJ2|1|XA|C|701
6OJ2|1|XA|A|702
6OJ2|1|XA|G|703
6OJ2|1|XA|A|704
6OJ2|1|XA|U|705
6OJ2|1|XA|A|706
6OJ2|1|XA|C|707

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XK

30S ribosomal protein S11

Chain YA

Large subunit ribosomal RNA; LSU rRNA