IL_6OJ2_217

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCCAC*GGAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OJ2_217 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.4093

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6OJ2|1|XA|G|1258
6OJ2|1|XA|C|1259
6OJ2|1|XA|C|1260
6OJ2|1|XA|A|1261
6OJ2|1|XA|C|1262
*
6OJ2|1|XA|G|1273
6OJ2|1|XA|G|1274
6OJ2|1|XA|A|1275
6OJ2|1|XA|G|1276
6OJ2|1|XA|C|1277

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XJ

30S ribosomal protein S10

Chain XU

30S ribosomal protein Thx