IL_6OJ2_270

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

6OJ2|1|YA|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OJ2_270 not in the Motif Atlas

Homologous match to IL_7RQB_045

Geometric discrepancy: 0.0933

The information below is about IL_7RQB_045

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6OJ2|1|YA|C|1196
6OJ2|1|YA|G|1197
6OJ2|1|YA|U|1198
*
6OJ2|1|YA|A|1247
6OJ2|1|YA|G|1248
6OJ2|1|YA|U|1249
6OJ2|1|YA|G|1250

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YF

50S ribosomal protein L4

Chain YP

50S ribosomal protein L15

Chain YU

50S ribosomal protein L20