IL_6OJ2_280

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OJ2_280 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.1512

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6OJ2|1|YA|C|1417
6OJ2|1|YA|G|1418
6OJ2|1|YA|A|1419
6OJ2|1|YA|U|1420
6OJ2|1|YA|G|1421
*
6OJ2|1|YA|C|1577
6OJ2|1|YA|U|1578
6OJ2|1|YA|A|1579
6OJ2|1|YA|A|1580
6OJ2|1|YA|G|1581

Current chains

Chain YA

23S rRNA

Nearby chains