3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
UAG*CG
Length
5 nucleotides
Bulged bases
6OJ2|1|YA|A|1490
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OJ2_287 not in the Motif Atlas
Homologous match to IL_7RQB_062
Geometric discrepancy: 0.1056
The information below is about IL_7RQB_062
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_37497.6
Basepair signature
cWW-L-cWW
Number of instances in this motif group
118

Unit IDs

6OJ2|1|YA|U|1489
6OJ2|1|YA|A|1490
6OJ2|1|YA|G|1491
*
6OJ2|1|YA|C|1499
6OJ2|1|YA|G|1500

Current chains

Chain YA
23S rRNA

Nearby chains

Chain YD
50S ribosomal protein L2

Coloring options:


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