IL_6OJ2_287

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

6OJ2|1|YA|A|1490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OJ2_287 not in the Motif Atlas

Homologous match to IL_7RQB_062

Geometric discrepancy: 0.1056

The information below is about IL_7RQB_062

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

6OJ2|1|YA|U|1489
6OJ2|1|YA|A|1490
6OJ2|1|YA|G|1491
*
6OJ2|1|YA|C|1499
6OJ2|1|YA|G|1500

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YD

50S ribosomal protein L2