3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GUG*CC
Length
5 nucleotides
Bulged bases
6OJ2|1|YA|U|2068
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OJ2_305 not in the Motif Atlas
Homologous match to IL_7RQB_080
Geometric discrepancy: 0.129
The information below is about IL_7RQB_080
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_83039.16
Basepair signature
cWW-L-cWW
Number of instances in this motif group
116

Unit IDs

6OJ2|1|YA|G|2067
6OJ2|1|YA|U|2068
6OJ2|1|YA|G|2069
*
6OJ2|1|YA|C|2442
6OJ2|1|YA|C|2443

Current chains

Chain YA
23S rRNA

Nearby chains

Chain YF
50S ribosomal protein L4
Chain YP
50S ribosomal protein L15

Coloring options:


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