IL_6OJ2_310
3D structure
- PDB id
- 6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GCGUAGGAUAG*CC
- Length
- 13 nucleotides
- Bulged bases
- 6OJ2|1|YA|C|2111, 6OJ2|1|YA|G|2112, 6OJ2|1|YA|G|2115, 6OJ2|1|YA|U|2118, 6OJ2|1|YA|A|2119
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OJ2_310 not in the Motif Atlas
- Geometric match to IL_5J7L_349
- Geometric discrepancy: 0.1992
- The information below is about IL_5J7L_349
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_42626.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 14
Unit IDs
6OJ2|1|YA|G|2110
6OJ2|1|YA|C|2111
6OJ2|1|YA|G|2112
6OJ2|1|YA|U|2113
6OJ2|1|YA|A|2114
6OJ2|1|YA|G|2115
6OJ2|1|YA|G|2116
6OJ2|1|YA|A|2117
6OJ2|1|YA|U|2118
6OJ2|1|YA|A|2119
6OJ2|1|YA|G|2120
*
6OJ2|1|YA|C|2178
6OJ2|1|YA|C|2179
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain QA
- Small subunit ribosomal RNA; SSU rRNA
- Chain XW
- Transfer RNA; tRNA
Coloring options: