IL_6OJ2_318

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OJ2_318 not in the Motif Atlas

Homologous match to IL_7A0S_085

Geometric discrepancy: 0.1424

The information below is about IL_7A0S_085

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

6OJ2|1|YA|U|2457
6OJ2|1|YA|G|2458
6OJ2|1|YA|A|2459
*
6OJ2|1|YA|U|2493
6OJ2|1|YA|G|2494

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XY

Transfer RNA; tRNA

Chain Y0

50S ribosomal protein L27

Chain YQ

50S ribosomal protein L16