IL_6OJ2_320
3D structure
- PDB id
- 6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CCGAG*CGGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OJ2_320 not in the Motif Atlas
- Homologous match to IL_4WF9_093
- Geometric discrepancy: 0.2048
- The information below is about IL_4WF9_093
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.1
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
6OJ2|1|YA|C|2466
6OJ2|1|YA|C|2467
6OJ2|1|YA|G|2468
6OJ2|1|YA|A|2469
6OJ2|1|YA|G|2470
*
6OJ2|1|YA|C|2480
6OJ2|1|YA|G|2481
6OJ2|1|YA|G|2482
6OJ2|1|YA|C|2483
6OJ2|1|YA|G|2484
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain XY
- Transfer RNA; tRNA
- Chain Y9
- 50S ribosomal protein L36
- Chain YQ
- 50S ribosomal protein L16
- Chain YZ
- 50S ribosomal protein L25
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