3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CU*AUAAG
Length
7 nucleotides
Bulged bases
6OJ2|1|YA|A|2713
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OJ2_330 not in the Motif Atlas
Homologous match to IL_7RQB_106
Geometric discrepancy: 0.0654
The information below is about IL_7RQB_106
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_71530.2
Basepair signature
cWW-cWW
Number of instances in this motif group
16

Unit IDs

6OJ2|1|YA|C|2695
6OJ2|1|YA|U|2696
*
6OJ2|1|YA|A|2711
6OJ2|1|YA|U|2712
6OJ2|1|YA|A|2712|||A
6OJ2|1|YA|A|2713
6OJ2|1|YA|G|2714

Current chains

Chain YA
23S rRNA

Nearby chains

Chain YR
50S ribosomal protein L17
Chain YT
50S ribosomal protein L19

Coloring options:


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