3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GGGG*CCGAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OJ2_333 not in the Motif Atlas
Homologous match to IL_7RQB_109
Geometric discrepancy: 0.1003
The information below is about IL_7RQB_109
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_58764.3
Basepair signature
cWW-L-R-L-R-L-cWW
Number of instances in this motif group
11

Unit IDs

6OJ2|1|YA|G|2843
6OJ2|1|YA|G|2844
6OJ2|1|YA|G|2845
6OJ2|1|YA|G|2846
*
6OJ2|1|YA|C|2870
6OJ2|1|YA|C|2871
6OJ2|1|YA|G|2872
6OJ2|1|YA|A|2873
6OJ2|1|YA|C|2874

Current chains

Chain YA
23S rRNA

Nearby chains

Chain YE
50S ribosomal protein L3
Chain YR
50S ribosomal protein L17
Chain YT
50S ribosomal protein L19

Coloring options:


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