IL_6OJ2_341

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAAU*GGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OJ2_341 not in the Motif Atlas

Homologous match to IL_4LFB_065

Geometric discrepancy: 0.0659

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6OJ2|1|QA|G|673
6OJ2|1|QA|G|674
6OJ2|1|QA|A|675
6OJ2|1|QA|A|676
6OJ2|1|QA|U|677
*
6OJ2|1|QA|G|713
6OJ2|1|QA|G|714
6OJ2|1|QA|A|715
6OJ2|1|QA|A|716
6OJ2|1|QA|C|717

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QF

30S ribosomal protein S6

Chain QK

30S ribosomal protein S11

Chain QR

30S ribosomal protein S18

Chain RD

50S ribosomal protein L2