IL_6OJ2_344

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGGC*GCUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OJ2_344 not in the Motif Atlas

Homologous match to IL_4WT8_231

Geometric discrepancy: 0.3218

The information below is about IL_4WT8_231

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OJ2|1|QY|G|2
6OJ2|1|QY|G|3
6OJ2|1|QY|G|4
6OJ2|1|QY|C|5
*
6OJ2|1|QY|G|68
6OJ2|1|QY|C|69
6OJ2|1|QY|U|70
6OJ2|1|QY|C|71

Current chains

Chain QY

A-site tRNAAla(GGC)

Nearby chains

Chain QV

Transfer RNA; tRNA

Chain RA

Large subunit ribosomal RNA; LSU rRNA